Variant report
| Variant | rs1861148 |
|---|---|
| Chromosome Location | chr2:59505612-59505613 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-VRK2-6 | chr2:59504667-59506535 | ENSG00000222030 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10166053 | 0.84[EUR][1000 genomes] |
| rs10168814 | 0.81[EUR][1000 genomes] |
| rs10190473 | 0.83[EUR][1000 genomes] |
| rs10203625 | 0.83[EUR][1000 genomes] |
| rs11125780 | 0.91[EUR][1000 genomes] |
| rs11125781 | 0.84[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11125782 | 0.90[EUR][1000 genomes] |
| rs11689998 | 0.86[EUR][1000 genomes] |
| rs11884634 | 0.81[EUR][1000 genomes] |
| rs11886801 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11901069 | 0.81[EUR][1000 genomes] |
| rs11902415 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12478341 | 0.81[EUR][1000 genomes] |
| rs1344461 | 0.80[EUR][1000 genomes] |
| rs1861147 | 0.94[EUR][1000 genomes] |
| rs2192570 | 0.81[EUR][1000 genomes] |
| rs35971179 | 0.83[EUR][1000 genomes] |
| rs4630753 | 0.89[ASN][1000 genomes] |
| rs7577786 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834170 | chr2:59436676-59604794 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv582099 | chr2:59494725-59563744 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv32749 | chr2:59504946-59509123 | Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:59504600-59509200 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
