Variant report

Variant	rs11125782
Chromosome Location	chr2:59507228-59507229
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10166053	0.81[AMR][1000 genomes]
rs10168814	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10190473	0.84[AMR][1000 genomes]
rs10192391	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10203625	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11125780	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11125781	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11679165	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11689998	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11884634	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11901069	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12478341	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1344461	0.85[EUR][1000 genomes]
rs1861147	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1861148	0.90[EUR][1000 genomes]
rs2192570	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35971179	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4672284	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv582099	chr2:59494725-59563744	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv32749	chr2:59504946-59509123	Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59504600-59509200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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