Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10166053	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10168814	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10190473	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10192391	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10203625	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11125780	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11125781	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11125782	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11125786	0.82[EUR][1000 genomes]
rs11679165	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11689998	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11691103	0.80[EUR][1000 genomes]
rs11884634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478341	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13028418	0.83[EUR][1000 genomes]
rs1344461	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1861147	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1861148	0.81[EUR][1000 genomes]
rs2192570	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35971179	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4672284	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834170	chr2:59436676-59604794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv582099	chr2:59494725-59563744	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1003668	chr2:59523642-59592144	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59535800-59540200	Weak transcription	Thymus	Thymus
2	chr2:59539000-59541400	Enhancers	Dnd41	blood
3	chr2:59539800-59541400	Enhancers	Primary T cells from cord blood	blood
4	chr2:59539800-59542400	Enhancers	Fetal Thymus	thymus

Quick Search: