Variant report

Variant	rs10868797
Chromosome Location	chr9:72887410-72887411
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72877983..72879807-chr9:72885567..72887477,3	K562	blood:
2	chr9:72872699..72874574-chr9:72884365..72888295,3	MCF-7	breast:
3	chr9:72884845..72889230-chr9:72890104..72893767,5	K562	blood:
4	chr9:72873479..72876233-chr9:72887388..72890137,3	K562	blood:

Variant related genes	Relation type
ENSG00000268364	Chromatin interaction
ENSG00000198887	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10868720	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10868775	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10868801	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10868805	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10868806	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11142098	0.80[ASN][1000 genomes]
rs11142378	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12344645	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1927099	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1927102	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4745000	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4745004	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7019180	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7036205	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7036266	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7038061	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72875200-72901400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:72875400-72906200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:72876000-72887600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:72876000-72898200	Weak transcription	Fetal Brain Male	brain
6	chr9:72876000-72906200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:72876400-72889200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:72876400-72916800	Weak transcription	Colonic Mucosa	Colon
9	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
10	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
12	chr9:72876600-72888200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr9:72876800-72900200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:72877000-72895400	Weak transcription	Right Ventricle	heart
15	chr9:72877000-72904800	Weak transcription	Brain Germinal Matrix	brain
16	chr9:72877000-72939800	Weak transcription	Gastric	stomach
17	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:72877600-72909600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:72877800-72888000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:72877800-72892000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:72878000-72887800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:72878400-72895000	Weak transcription	Fetal Brain Female	brain
24	chr9:72878600-72889800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:72878600-72899600	Weak transcription	Fetal Heart	heart
26	chr9:72878600-72899800	Weak transcription	Small Intestine	intestine
27	chr9:72878600-72902400	Weak transcription	Brain Angular Gyrus	brain
28	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr9:72878800-72887600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:72878800-72887800	Strong transcription	HSMM	muscle
31	chr9:72879000-72898600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:72879400-72891000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr9:72880000-72887800	Strong transcription	Dnd41	blood
34	chr9:72880000-72888000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:72880000-72891000	Weak transcription	Fetal Kidney	kidney
36	chr9:72880000-72895600	Weak transcription	Brain Substantia Nigra	brain
37	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr9:72880200-72895400	Weak transcription	NHEK	skin
39	chr9:72880200-72906200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr9:72880400-72895200	Weak transcription	Colon Smooth Muscle	Colon
41	chr9:72880400-72895400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr9:72880400-72900200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:72880800-72895400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr9:72881000-72905000	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:72881000-72905000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:72881600-72895400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr9:72882800-72893400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr9:72882800-72899800	Weak transcription	Ovary	ovary
49	chr9:72882800-72906000	Weak transcription	K562	blood
50	chr9:72883200-72899800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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