Variant report

Variant	rs7036266
Chromosome Location	chr9:72854732-72854733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10868720	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10868752	0.83[EUR][1000 genomes]
rs10868775	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868797	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10868801	0.94[ASN][1000 genomes]
rs10868805	0.88[ASN][1000 genomes]
rs10868806	0.88[ASN][1000 genomes]
rs11142029	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11142098	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11142378	0.87[ASN][1000 genomes]
rs12344645	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1927099	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1927102	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4745000	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4745004	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7019180	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7036205	0.96[ASN][1000 genomes]
rs7038061	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9650766	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72828000-72858800	Weak transcription	Gastric	stomach
2	chr9:72833600-72856800	Weak transcription	Aorta	Aorta
3	chr9:72844400-72855400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72845000-72858600	Weak transcription	Fetal Stomach	stomach
5	chr9:72845000-72859200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:72845000-72870400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:72847400-72857600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:72847400-72870800	Weak transcription	Pancreas	Pancrea
9	chr9:72849600-72855400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:72854600-72856000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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