Variant report

Variant	rs10869574
Chromosome Location	chr9:71564424-71564425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10114061	0.94[ASN][1000 genomes]
rs10114872	0.87[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10115104	0.94[ASN][1000 genomes]
rs10115155	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10115608	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10117043	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10117188	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10122975	0.92[ASN][1000 genomes]
rs10124169	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10511962	0.82[CHB][hapmap]
rs10746979	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10781227	0.82[CHB][hapmap]
rs10781264	0.85[CEU][hapmap]
rs10781283	0.90[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10781286	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10781293	0.86[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10869400	0.82[CHB][hapmap]
rs10869401	0.82[CHB][hapmap]
rs10869487	0.82[CEU][hapmap]
rs10869541	0.81[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10869543	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10869572	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10869578	0.89[ASN][1000 genomes]
rs10869599	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10869607	0.96[ASN][1000 genomes]
rs10869610	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11143802	0.94[CEU][hapmap]
rs11144476	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11792022	0.82[CHB][hapmap]
rs12337140	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12349586	0.94[CEU][hapmap]
rs12352694	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13300006	0.86[ASN][1000 genomes]
rs2027205	0.86[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2152649	0.85[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2309384	0.80[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4375069	0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4745402	0.83[JPT][hapmap]
rs4745451	0.95[CEU][hapmap]
rs6560391	0.86[CHB][hapmap]
rs6560392	0.82[CHB][hapmap]
rs6560420	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6560444	0.90[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6560467	0.89[ASN][1000 genomes]
rs7018692	0.90[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs7020192	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7021212	0.86[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7031059	0.95[CEU][hapmap]
rs7037010	0.92[ASN][1000 genomes]
rs7041792	0.84[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs756326	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7852633	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs7853501	0.82[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7867240	0.82[CEU][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7873239	0.84[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1053402	chr9:71399722-71819949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv540146	chr9:71399722-71819949	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1043689	chr9:71399922-71800338	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv540147	chr9:71399922-71800338	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1047540	chr9:71401918-71803639	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv466393	chr9:71453443-71704827	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv614547	chr9:71453443-71704827	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv614549	chr9:71506459-71659280	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1051798	chr9:71511805-71792032	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
18	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
19	esv1833433	chr9:71544920-71598165	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71510400-71576200	Weak transcription	Stomach Mucosa	stomach
2	chr9:71519400-71573000	Weak transcription	Gastric	stomach
3	chr9:71535000-71569600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:71549200-71566200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:71549200-71570000	Weak transcription	Fetal Stomach	stomach
6	chr9:71549600-71569600	Weak transcription	Fetal Kidney	kidney
7	chr9:71553400-71567200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:71553800-71565000	Weak transcription	Pancreas	Pancrea
9	chr9:71554400-71565200	Weak transcription	Small Intestine	intestine
10	chr9:71554400-71569600	Weak transcription	Aorta	Aorta
11	chr9:71556600-71566600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr9:71557400-71566400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:71557600-71578400	Weak transcription	HepG2	liver
14	chr9:71558000-71565200	Weak transcription	Lung	lung
15	chr9:71558000-71569200	Weak transcription	Right Ventricle	heart
16	chr9:71558200-71579200	Weak transcription	Colonic Mucosa	Colon
17	chr9:71558400-71565200	Weak transcription	Left Ventricle	heart
18	chr9:71558400-71566400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr9:71559200-71565400	Strong transcription	Primary B cells from cord blood	blood
20	chr9:71559800-71564800	Weak transcription	Fetal Intestine Large	intestine
21	chr9:71560600-71566400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:71561600-71566600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr9:71562000-71566600	Strong transcription	Fetal Intestine Small	intestine
24	chr9:71562400-71565000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:71562400-71565000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:71562400-71578000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:71562400-71579400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:71563000-71566800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:71563400-71564600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr9:71563400-71564800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr9:71563400-71567000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:71563400-71569600	Weak transcription	Brain Germinal Matrix	brain
33	chr9:71563400-71569600	Weak transcription	Spleen	Spleen
34	chr9:71563400-71578400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr9:71563600-71565200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:71563800-71566400	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr9:71563800-71566400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr9:71564000-71565200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr9:71564000-71565600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:71564000-71567000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr9:71564200-71564600	Flanking Active TSS	GM12878-XiMat	blood
42	chr9:71564200-71564800	Enhancers	Fetal Heart	heart
43	chr9:71564200-71564800	Enhancers	Placenta	Placenta
44	chr9:71564200-71565000	Enhancers	HMEC	breast
45	chr9:71564200-71565000	Enhancers	NHEK	skin
46	chr9:71564200-71565200	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr9:71564400-71564600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:71564400-71564600	Flanking Active TSS	HSMMtube	muscle
49	chr9:71564400-71564800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:71564400-71564800	Active TSS	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links