Variant report

Variant	rs10872112
Chromosome Location	chr6:114421741-114421742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114416682..114419101-chr6:114420825..114422417,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1011911	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11153464	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11153466	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12663844	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1401772	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271895	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2271896	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2280358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7758977	0.81[ASN][1000 genomes]
rs9387189	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9387190	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9400693	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9400696	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984598	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114415000-114429600	Weak transcription	HepG2	liver
2	chr6:114417400-114422400	Weak transcription	Brain Substantia Nigra	brain
3	chr6:114417400-114426200	Weak transcription	Brain Anterior Caudate	brain
4	chr6:114417800-114428400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:114419400-114421800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:114421000-114422400	Enhancers	NHDF-Ad	bronchial
7	chr6:114421200-114423600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:114421400-114421800	Genic enhancers	HSMMtube	muscle
9	chr6:114421400-114422000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:114421400-114422000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:114421400-114422000	Enhancers	HUVEC	blood vessel
12	chr6:114421400-114422000	Enhancers	NHLF	lung
13	chr6:114421400-114422200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:114421400-114422200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:114421400-114422200	Enhancers	HSMM	muscle
16	chr6:114421400-114422400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:114421400-114422800	Enhancers	Osteobl	bone
18	chr6:114421600-114421800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:114421600-114422000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:114421600-114422000	Enhancers	NH-A	brain
21	chr6:114421600-114422200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:114421600-114422400	Enhancers	Adipose Nuclei	Adipose

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