Variant report

Variant	rs9387190
Chromosome Location	chr6:114443862-114443863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1011911	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10872112	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11153464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153466	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12663844	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1401772	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17075859	0.81[YRI][hapmap]
rs2271895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271896	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2280358	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7758977	0.83[ASN][1000 genomes]
rs7776443	0.81[YRI][hapmap]
rs9387189	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9400696	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984598	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114430800-114477800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:114438000-114445200	Weak transcription	Psoas Muscle	Psoas
3	chr6:114439400-114446800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:114442400-114444000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:114442400-114444000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:114443000-114444000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:114443000-114444000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:114443000-114444000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:114443000-114444000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:114443000-114444000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:114443000-114444000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:114443200-114444000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr6:114443200-114444000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:114443200-114444000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:114443200-114444000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:114443200-114444000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:114443200-114444000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:114443200-114444200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:114443400-114444000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:114443400-114444000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:114443400-114444000	Enhancers	HepG2	liver
22	chr6:114443400-114444000	Enhancers	HSMM	muscle
23	chr6:114443400-114444000	Enhancers	HSMMtube	muscle
24	chr6:114443600-114445200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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