Variant report

Variant	rs11153466
Chromosome Location	chr6:114455821-114455822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1011911	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10872112	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11153464	1.00[CEU][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12663844	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1401772	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2271895	1.00[CEU][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2271896	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2280358	0.83[JPT][hapmap]
rs9387189	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9387190	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9400693	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9400696	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs984598	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1034897	chr6:114454186-114555679	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114430800-114477800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:114444000-114465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:114444000-114466000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:114445600-114457000	Weak transcription	Psoas Muscle	Psoas
5	chr6:114445600-114461200	Weak transcription	HSMMtube	muscle
6	chr6:114445600-114461600	Weak transcription	HSMM	muscle
7	chr6:114447400-114456200	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:114447400-114466000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:114454400-114456400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:114454400-114466000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:114455200-114457000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:114455400-114466800	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links