Variant report

Variant	rs10872155
Chromosome Location	chr6:117999988-117999989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117745008..117746813-chr6:117997371..118000151,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11153695	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2498586	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2498587	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2498588	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2498589	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2501625	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4330560	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406269	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552764	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899715	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72951506	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117997400-118016200	Weak transcription	Aorta	Aorta
2	chr6:117997600-118000600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:117997600-118003000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr6:117997600-118005600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:117997800-118000000	Enhancers	Fetal Brain Male	brain
6	chr6:117997800-118002000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:117997800-118003800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:117998000-118015200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:117998200-118003200	Weak transcription	Lung	lung
10	chr6:117998200-118003400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:117998200-118004600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:117998200-118005600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:117998200-118009600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:117998200-118016000	Weak transcription	Fetal Stomach	stomach
15	chr6:117998200-118025800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:117998200-118026400	Weak transcription	Esophagus	oesophagus
17	chr6:117998400-118006200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:117998400-118015800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:117998600-118000400	Active TSS	GM12878-XiMat	blood
20	chr6:117998600-118000600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:117998600-118000800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:117998600-118002600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:117998800-118002200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:117998800-118003800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr6:117998800-118004200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr6:117998800-118015200	Weak transcription	Fetal Thymus	thymus
27	chr6:117998800-118015400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:117998800-118016000	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:117998800-118023000	Weak transcription	HSMMtube	muscle
30	chr6:117999000-118000000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:117999000-118000000	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr6:117999000-118000400	Weak transcription	Primary B cells from cord blood	blood
33	chr6:117999000-118000400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:117999000-118000400	Weak transcription	Right Ventricle	heart
35	chr6:117999000-118000400	Weak transcription	Spleen	Spleen
36	chr6:117999000-118000600	Enhancers	Adipose Nuclei	Adipose
37	chr6:117999000-118000800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:117999000-118000800	Weak transcription	Pancreas	Pancrea
39	chr6:117999000-118001000	Genic enhancers	Primary T cells from cord blood	blood
40	chr6:117999000-118001200	Weak transcription	Small Intestine	intestine
41	chr6:117999000-118001800	Weak transcription	Fetal Heart	heart
42	chr6:117999000-118003000	Enhancers	Liver	Liver
43	chr6:117999000-118003000	Weak transcription	Right Atrium	heart
44	chr6:117999000-118015800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:117999000-118039800	Weak transcription	Gastric	stomach
46	chr6:117999000-118042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:117999200-118000000	Weak transcription	Left Ventricle	heart
48	chr6:117999200-118000200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:117999200-118000600	Weak transcription	HSMM	muscle
50	chr6:117999200-118000800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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