Variant report

Variant	rs4552764
Chromosome Location	chr6:118003792-118003793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117995945..117997757-chr6:118003767..118006280,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153989	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10872155	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153695	0.95[EUR][1000 genomes]
rs2498586	0.93[EUR][1000 genomes]
rs2498587	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2498588	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2498589	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2501625	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4330560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406269	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899715	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72951506	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117997400-118016200	Weak transcription	Aorta	Aorta
2	chr6:117997600-118005600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:117997800-118003800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:117998000-118015200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:117998200-118004600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:117998200-118005600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:117998200-118009600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:117998200-118016000	Weak transcription	Fetal Stomach	stomach
9	chr6:117998200-118025800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:117998200-118026400	Weak transcription	Esophagus	oesophagus
11	chr6:117998400-118006200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:117998400-118015800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:117998800-118003800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:117998800-118004200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr6:117998800-118015200	Weak transcription	Fetal Thymus	thymus
16	chr6:117998800-118015400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:117998800-118016000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:117998800-118023000	Weak transcription	HSMMtube	muscle
19	chr6:117999000-118015800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:117999000-118039800	Weak transcription	Gastric	stomach
21	chr6:117999000-118042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:117999200-118010200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:117999200-118010200	Weak transcription	Fetal Intestine Large	intestine
24	chr6:117999200-118013400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:117999200-118014000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:117999200-118014000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:117999200-118014600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:117999200-118014800	Weak transcription	NH-A	brain
29	chr6:117999200-118015400	Weak transcription	NHDF-Ad	bronchial
30	chr6:117999200-118015800	Weak transcription	Brain Germinal Matrix	brain
31	chr6:117999200-118016000	Weak transcription	Fetal Intestine Small	intestine
32	chr6:117999200-118016400	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:117999200-118016400	Weak transcription	Brain Substantia Nigra	brain
34	chr6:117999200-118028200	Weak transcription	Hela-S3	cervix
35	chr6:117999200-118029600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:117999400-118003800	Genic enhancers	HepG2	liver
37	chr6:117999400-118004600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:117999400-118014400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:117999400-118014600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:117999400-118015200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:117999400-118015800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:117999400-118015800	Weak transcription	Fetal Brain Female	brain
43	chr6:117999400-118018200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:117999600-118015800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:117999600-118015800	Weak transcription	Fetal Lung	lung
46	chr6:117999800-118014600	Weak transcription	HMEC	breast
47	chr6:117999800-118014800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:117999800-118015400	Weak transcription	Fetal Kidney	kidney
49	chr6:117999800-118016400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr6:118000400-118003800	Enhancers	Right Ventricle	heart

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