Variant report

Variant	rs4406269
Chromosome Location	chr6:118000850-118000851
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10872155	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153695	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2498586	1.00[CEU][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs2498587	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2498588	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2498589	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2501625	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4330560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552764	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899715	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72951506	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117997400-118016200	Weak transcription	Aorta	Aorta
2	chr6:117997600-118003000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr6:117997600-118005600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:117997800-118002000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:117997800-118003800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:117998000-118015200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:117998200-118003200	Weak transcription	Lung	lung
8	chr6:117998200-118003400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:117998200-118004600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:117998200-118005600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:117998200-118009600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:117998200-118016000	Weak transcription	Fetal Stomach	stomach
13	chr6:117998200-118025800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:117998200-118026400	Weak transcription	Esophagus	oesophagus
15	chr6:117998400-118006200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:117998400-118015800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:117998600-118002600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:117998800-118002200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:117998800-118003800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr6:117998800-118004200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:117998800-118015200	Weak transcription	Fetal Thymus	thymus
22	chr6:117998800-118015400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:117998800-118016000	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:117998800-118023000	Weak transcription	HSMMtube	muscle
25	chr6:117999000-118001000	Genic enhancers	Primary T cells from cord blood	blood
26	chr6:117999000-118001200	Weak transcription	Small Intestine	intestine
27	chr6:117999000-118001800	Weak transcription	Fetal Heart	heart
28	chr6:117999000-118003000	Enhancers	Liver	Liver
29	chr6:117999000-118003000	Weak transcription	Right Atrium	heart
30	chr6:117999000-118015800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:117999000-118039800	Weak transcription	Gastric	stomach
32	chr6:117999000-118042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:117999200-118001200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:117999200-118001400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:117999200-118001600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:117999200-118001800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:117999200-118002200	Weak transcription	Brain Angular Gyrus	brain
38	chr6:117999200-118002800	Genic enhancers	K562	blood
39	chr6:117999200-118010200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:117999200-118010200	Weak transcription	Fetal Intestine Large	intestine
41	chr6:117999200-118013400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:117999200-118014000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:117999200-118014000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:117999200-118014600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:117999200-118014800	Weak transcription	NH-A	brain
46	chr6:117999200-118015400	Weak transcription	NHDF-Ad	bronchial
47	chr6:117999200-118015800	Weak transcription	Brain Germinal Matrix	brain
48	chr6:117999200-118016000	Weak transcription	Fetal Intestine Small	intestine
49	chr6:117999200-118016400	Weak transcription	Brain Hippocampus Middle	brain
50	chr6:117999200-118016400	Weak transcription	Brain Substantia Nigra	brain

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