Variant report

Variant	rs10873865
Chromosome Location	chr1:76509277-76509278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10782605	0.80[EUR][1000 genomes]
rs12032833	0.89[AFR][1000 genomes]
rs12032853	0.87[AFR][1000 genomes]
rs12033420	0.89[AFR][1000 genomes]
rs12040836	0.89[AFR][1000 genomes]
rs12125940	0.83[EUR][1000 genomes]
rs12126074	0.83[EUR][1000 genomes]
rs12145522	0.83[EUR][1000 genomes]
rs1251484	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251486	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1251489	0.90[EUR][1000 genomes]
rs1251492	0.91[EUR][1000 genomes]
rs1251494	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1251495	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1251496	0.91[EUR][1000 genomes]
rs1251501	0.91[EUR][1000 genomes]
rs1251502	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1251504	0.91[EUR][1000 genomes]
rs1251505	0.91[EUR][1000 genomes]
rs1251506	0.89[EUR][1000 genomes]
rs1251507	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1251509	0.90[EUR][1000 genomes]
rs1251510	0.89[EUR][1000 genomes]
rs1251511	0.91[EUR][1000 genomes]
rs1251512	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1251513	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1266117	0.91[EUR][1000 genomes]
rs1340690	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1340691	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370714	0.89[AFR][1000 genomes]
rs17607383	0.90[EUR][1000 genomes]
rs17659615	0.90[EUR][1000 genomes]
rs1770895	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1934816	0.89[AFR][1000 genomes]
rs34354538	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35318380	0.83[EUR][1000 genomes]
rs35381129	0.83[EUR][1000 genomes]
rs4083965	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs5022490	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59862803	0.83[AFR][1000 genomes]
rs60182743	0.83[EUR][1000 genomes]
rs61771303	0.89[AFR][1000 genomes]
rs6679705	0.83[AFR][1000 genomes]
rs6685661	0.89[AFR][1000 genomes]
rs6686341	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs6688109	0.89[AFR][1000 genomes]
rs6688802	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs6692421	0.87[AFR][1000 genomes]
rs6696470	0.89[AFR][1000 genomes]
rs6703050	0.89[AFR][1000 genomes]
rs6703053	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs7513692	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs7536325	0.89[AFR][1000 genomes]
rs7550814	0.93[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76503600-76509600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:76506400-76514000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:76506600-76514000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:76507400-76509600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:76507600-76513600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:76507800-76513800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:76507800-76514000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:76509200-76509800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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