Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10782605	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10873865	0.83[EUR][1000 genomes]
rs12125940	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126074	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145522	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251484	0.87[EUR][1000 genomes]
rs1251485	0.87[EUR][1000 genomes]
rs1251486	0.83[EUR][1000 genomes]
rs1251489	0.83[EUR][1000 genomes]
rs1251492	0.84[EUR][1000 genomes]
rs1251494	0.83[EUR][1000 genomes]
rs1251495	0.83[EUR][1000 genomes]
rs1251496	0.84[EUR][1000 genomes]
rs1251501	0.83[EUR][1000 genomes]
rs1251502	0.83[EUR][1000 genomes]
rs1251504	0.84[EUR][1000 genomes]
rs1251505	0.84[EUR][1000 genomes]
rs1251506	0.83[EUR][1000 genomes]
rs1251507	0.83[EUR][1000 genomes]
rs1251509	0.83[EUR][1000 genomes]
rs1251510	0.82[EUR][1000 genomes]
rs1251511	0.84[EUR][1000 genomes]
rs1251512	0.83[EUR][1000 genomes]
rs1251513	0.83[EUR][1000 genomes]
rs1266117	0.84[EUR][1000 genomes]
rs1340690	0.84[EUR][1000 genomes]
rs1340691	0.83[EUR][1000 genomes]
rs17607383	0.83[EUR][1000 genomes]
rs17659615	0.83[EUR][1000 genomes]
rs1770895	0.84[EUR][1000 genomes]
rs35381129	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5022490	0.83[EUR][1000 genomes]
rs60182743	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3362236	chr1:76481400-76481990	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76479800-76484000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:76479800-76484200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:76481000-76483600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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