Variant report

Variant	rs17659615
Chromosome Location	chr1:76514397-76514398
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10443175	0.86[EUR][1000 genomes]
rs10873865	0.90[EUR][1000 genomes]
rs12123144	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs12123760	0.91[CEU][hapmap]
rs12125940	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12126074	0.83[EUR][1000 genomes]
rs12127822	0.82[EUR][1000 genomes]
rs12145522	0.83[EUR][1000 genomes]
rs1251484	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1251485	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1251486	0.93[EUR][1000 genomes]
rs1251489	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1251492	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1251494	0.94[EUR][1000 genomes]
rs1251495	0.94[EUR][1000 genomes]
rs1251496	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1251501	0.93[EUR][1000 genomes]
rs1251502	0.93[EUR][1000 genomes]
rs1251504	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1251505	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1251506	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1251507	0.93[EUR][1000 genomes]
rs1251509	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1251510	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1251511	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1251512	0.93[EUR][1000 genomes]
rs1251513	0.93[EUR][1000 genomes]
rs1266117	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1340690	0.89[EUR][1000 genomes]
rs1340691	0.85[EUR][1000 genomes]
rs17607383	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1770895	0.85[EUR][1000 genomes]
rs34354538	0.90[EUR][1000 genomes]
rs35318380	0.83[EUR][1000 genomes]
rs35381129	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5022490	0.93[EUR][1000 genomes]
rs60182743	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv947186	chr1:76512447-76530843	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76513600-76515200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:76513600-76515400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:76513800-76514400	Enhancers	Fetal Lung	lung
4	chr1:76513800-76515400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:76513800-76515400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:76513800-76515400	Enhancers	Fetal Brain Male	brain
7	chr1:76514000-76514400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:76514000-76514400	Enhancers	Fetal Stomach	stomach
9	chr1:76514000-76514600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:76514000-76515200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:76514000-76515400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:76514000-76515400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:76514200-76514600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:76514200-76515200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:76514200-76518600	Weak transcription	H9 Cell Line	embryonic stem cell

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