Variant report

Variant	rs10874829
Chromosome Location	chr1:94470426-94470427
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10874828	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs11165062	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11165063	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[ASN][1000 genomes]
rs12049183	0.87[EUR][1000 genomes]
rs17110808	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17391612	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2275029	0.87[CHD][hapmap]
rs2275031	0.87[CHD][hapmap]
rs3789391	1.00[CEU][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs4147857	0.87[CHD][hapmap]
rs4147859	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147862	0.87[CHD][hapmap]
rs4147863	0.87[CHD][hapmap];0.85[YRI][hapmap]
rs4147866	0.90[ASN][1000 genomes]
rs55691342	0.90[ASN][1000 genomes]
rs55694362	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56166161	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7518454	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94458800-94477000	Weak transcription	Right Atrium	heart
2	chr1:94464000-94472200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:94468200-94476400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:94469000-94470600	Weak transcription	HMEC	breast
5	chr1:94470000-94471200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:94470400-94470800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:94470400-94471000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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