Variant report

Variant	rs4147866
Chromosome Location	chr1:94466154-94466155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10874828	1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[ASN][1000 genomes]
rs10874829	0.82[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11165062	0.82[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11165063	0.82[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs17110808	0.82[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs17391612	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4147859	0.89[ASN][1000 genomes]
rs4147861	0.89[ASN][1000 genomes]
rs55691342	0.81[ASN][1000 genomes]
rs55694362	0.89[ASN][1000 genomes]
rs56166161	0.89[ASN][1000 genomes]
rs7518454	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94458800-94477000	Weak transcription	Right Atrium	heart
2	chr1:94462200-94467000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:94463800-94468200	Weak transcription	HMEC	breast
4	chr1:94464000-94472200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:94465200-94466200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:94465200-94466400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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