Variant report

Variant	rs17110808
Chromosome Location	chr1:94474872-94474873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94474260..94476324-chr1:94481823..94483711,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10874828	0.90[JPT][hapmap]
rs10874829	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11165062	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11165063	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17391612	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1801574	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs2065711	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs2065712	0.85[CHD][hapmap];0.84[LWK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs2275029	0.87[CHD][hapmap];0.89[LWK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs2275031	0.87[CHD][hapmap];0.89[LWK][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes]
rs2275032	0.87[AFR][1000 genomes]
rs3789379	0.87[AFR][1000 genomes]
rs3789382	0.87[AFR][1000 genomes]
rs3789383	0.87[AFR][1000 genomes]
rs3789384	0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs3789385	0.87[AFR][1000 genomes]
rs3789386	0.87[AFR][1000 genomes]
rs3789387	1.00[TSI][hapmap]
rs3789391	0.87[CEU][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap]
rs4147856	0.90[YRI][hapmap];0.90[AFR][1000 genomes]
rs4147857	0.85[ASW][hapmap];0.87[CHD][hapmap];0.87[LWK][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs4147859	1.00[ASN][1000 genomes]
rs4147861	1.00[ASN][1000 genomes]
rs4147862	0.87[CHD][hapmap];0.86[YRI][hapmap]
rs4147863	0.87[CHD][hapmap]
rs4147866	0.89[ASN][1000 genomes]
rs55691342	0.88[ASN][1000 genomes]
rs55694362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518454	0.83[ASN][1000 genomes]
rs7531001	0.91[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv546849	chr1:94472814-94477232	Bivalent Enhancer Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94458800-94477000	Weak transcription	Right Atrium	heart
2	chr1:94468200-94476400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:94471200-94476200	Weak transcription	Lung	lung
4	chr1:94471200-94480600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:94472400-94476200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:94474400-94475000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr1:94474600-94475400	Enhancers	Osteobl	bone
8	chr1:94474800-94475400	Enhancers	NH-A	brain
9	chr1:94474800-94475600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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