Variant report

Variant	rs10875698
Chromosome Location	chr12:48305533-48305534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11168302	0.84[AFR][1000 genomes]
rs11168303	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11168304	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11168305	0.82[AFR][1000 genomes]
rs34438994	1.00[EUR][1000 genomes]
rs4077869	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4411327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4514490	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57419443	1.00[EUR][1000 genomes]
rs58915362	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61553170	1.00[EUR][1000 genomes]
rs7302038	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7970168	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7975847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7979360	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428589	chr12:48282920-48341192	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48300000-48307200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr12:48302600-48306400	Enhancers	Placenta	Placenta
3	chr12:48303400-48306000	Enhancers	Duodenum Mucosa	Duodenum
4	chr12:48304600-48305800	Weak transcription	Small Intestine	intestine
5	chr12:48304800-48305800	Weak transcription	Fetal Intestine Large	intestine
6	chr12:48304800-48306200	Weak transcription	Fetal Heart	heart
7	chr12:48305200-48306200	Weak transcription	HepG2	liver
8	chr12:48305200-48307400	Enhancers	Fetal Intestine Small	intestine
9	chr12:48305400-48305600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr12:48305400-48306000	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr12:48305400-48306400	Enhancers	Colonic Mucosa	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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