Variant report
| Variant | rs11168302 |
|---|---|
| Chromosome Location | chr12:48312253-48312254 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111424 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10875698 | 0.84[AFR][1000 genomes] |
| rs10875700 | 0.96[YRI][hapmap] |
| rs10875702 | 0.96[YRI][hapmap] |
| rs11168303 | 0.96[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs11168304 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs11168305 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11574012 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs11574027 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs12581281 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs4077869 | 0.89[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs4402365 | 0.88[YRI][hapmap] |
| rs4411327 | 0.84[AFR][1000 genomes] |
| rs4514490 | 0.86[AFR][1000 genomes] |
| rs58379944 | 0.86[EUR][1000 genomes] |
| rs58915362 | 0.80[AFR][1000 genomes] |
| rs7302038 | 0.88[ASW][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs7975847 | 0.84[AFR][1000 genomes] |
| rs7979360 | 0.96[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428589 | chr12:48282920-48341192 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11168302 | FAM113B | cis | lymphoblastoid | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
