Variant report
| Variant | rs11168305 |
|---|---|
| Chromosome Location | chr12:48314900-48314901 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111424 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10875698 | 0.82[AFR][1000 genomes] |
| rs11168302 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168303 | 0.81[AFR][1000 genomes] |
| rs11168304 | 0.85[AFR][1000 genomes] |
| rs11574012 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs11574027 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs12581281 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs4411327 | 0.82[AFR][1000 genomes] |
| rs4514490 | 0.86[AFR][1000 genomes] |
| rs58379944 | 0.86[EUR][1000 genomes] |
| rs7302038 | 0.81[AFR][1000 genomes] |
| rs7975847 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428589 | chr12:48282920-48341192 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
