Variant report
| Variant | rs10875699 |
|---|---|
| Chromosome Location | chr12:48309570-48309571 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:48305115..48307646-chr12:48309250..48311512,3 | K562 | blood: | |
| 2 | chr12:48306813..48310122-chr12:48315023..48318005,3 | K562 | blood: | |
| 3 | chr12:48297407..48299746-chr12:48306202..48309710,3 | MCF-7 | breast: | |
| 4 | chr12:48300486..48303147-chr12:48306990..48309895,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111424 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10083198 | 0.87[ASN][1000 genomes] |
| rs10747527 | 0.87[AMR][1000 genomes] |
| rs10783219 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12304110 | 0.89[ASN][1000 genomes] |
| rs4578458 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4578459 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4760603 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4760655 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4760669 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4760670 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4760672 | 0.85[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6580644 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6580645 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7132324 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7299460 | 0.93[ASN][1000 genomes] |
| rs7312286 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7965397 | 0.85[AMR][1000 genomes] |
| rs7970314 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428589 | chr12:48282920-48341192 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
