Variant report

Variant	rs6580644
Chromosome Location	chr12:48306336-48306337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10083198	0.86[ASN][1000 genomes]
rs10747527	0.85[AMR][1000 genomes]
rs10783219	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10875699	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12304110	0.90[ASN][1000 genomes]
rs4578458	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4578459	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4760603	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4760655	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4760669	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4760670	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4760672	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6580645	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7132324	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7299460	0.92[ASN][1000 genomes]
rs7312286	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7965397	0.83[AMR][1000 genomes]
rs7970314	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428589	chr12:48282920-48341192	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48300000-48307200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr12:48302600-48306400	Enhancers	Placenta	Placenta
3	chr12:48305200-48307400	Enhancers	Fetal Intestine Small	intestine
4	chr12:48305400-48306400	Enhancers	Colonic Mucosa	Colon
5	chr12:48305800-48307600	Enhancers	Fetal Intestine Large	intestine
6	chr12:48306000-48306400	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr12:48306000-48306600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
8	chr12:48306000-48307000	Enhancers	Stomach Mucosa	stomach
9	chr12:48306200-48306600	Enhancers	Left Ventricle	heart
10	chr12:48306200-48307000	Enhancers	HepG2	liver
11	chr12:48306200-48307200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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