Variant report

Variant	rs10876831
Chromosome Location	chr12:56004511-56004512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr12:56004457-56004700	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
OR6U2P	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10161247	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11171612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11171617	1.00[ASN][1000 genomes]
rs11171618	1.00[ASN][1000 genomes]
rs11171619	1.00[ASN][1000 genomes]
rs11171620	1.00[ASN][1000 genomes]
rs11171621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11171622	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11171643	1.00[EUR][1000 genomes]
rs11171645	1.00[EUR][1000 genomes]
rs12299176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12301775	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12303548	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12305769	1.00[EUR][1000 genomes]
rs12306327	1.00[EUR][1000 genomes]
rs12307395	1.00[ASN][1000 genomes]
rs12308737	1.00[ASN][1000 genomes]
rs12310127	1.00[ASN][1000 genomes]
rs12310130	1.00[ASN][1000 genomes]
rs12313844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12313935	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12314499	1.00[ASN][1000 genomes]
rs12314803	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12315025	1.00[ASN][1000 genomes]
rs12578161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12580351	1.00[AMR][1000 genomes]
rs12580355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17117814	1.00[ASN][1000 genomes]
rs17120033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17120045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36194114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4268543	1.00[ASN][1000 genomes]
rs4545598	1.00[ASN][1000 genomes]
rs59430466	1.00[ASN][1000 genomes]
rs73329943	1.00[ASN][1000 genomes]
rs73329946	1.00[ASN][1000 genomes]
rs7973424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv983247	chr12:56000681-56011266	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3509550	chr12:56001135-56005383	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
5	esv2488219	chr12:56001465-56004826	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv3509554	chr12:56001526-56004682	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3487453	chr12:56001585-56005333	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv3436833	chr12:56001585-56006083	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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