Variant report

Variant	rs7973424
Chromosome Location	chr12:56014331-56014332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:55582658..55583826-chr12:56013132..56014407,9	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10161247	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10876831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11171612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11171617	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11171618	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11171619	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11171620	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11171621	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11171622	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11171643	1.00[EUR][1000 genomes]
rs11171645	1.00[EUR][1000 genomes]
rs12299176	1.00[EUR][1000 genomes]
rs12301775	1.00[EUR][1000 genomes]
rs12303548	0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs12305769	1.00[EUR][1000 genomes]
rs12306327	1.00[EUR][1000 genomes]
rs12307395	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12308737	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12310127	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12310130	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12313844	1.00[EUR][1000 genomes]
rs12313935	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12314499	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12314803	1.00[EUR][1000 genomes]
rs12315025	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12578161	1.00[EUR][1000 genomes]
rs12580355	1.00[EUR][1000 genomes]
rs17117814	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17120033	1.00[EUR][1000 genomes]
rs17120045	1.00[EUR][1000 genomes]
rs2062166	1.00[CEU][hapmap]
rs36194114	1.00[EUR][1000 genomes]
rs4268543	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4545598	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58896287	0.88[AFR][1000 genomes]
rs59430466	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73329943	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73329946	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56013200-56014400	Enhancers	A549	lung
2	chr12:56013600-56014400	Enhancers	Primary neutrophils fromperipheralblood	blood

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