Variant report

Variant	rs11171621
Chromosome Location	chr12:56021352-56021353
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:56018414..56023291-chr12:56023522..56027255,6	K562	blood:
2	chr12:56019963..56023291-chr12:56024390..56027255,3	K562	blood:
3	chr12:56019572..56022533-chr12:56030768..56032739,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10161247	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10876831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11171612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11171617	0.99[ASN][1000 genomes]
rs11171618	0.99[ASN][1000 genomes]
rs11171619	0.99[ASN][1000 genomes]
rs11171620	0.99[ASN][1000 genomes]
rs11171622	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11171643	1.00[EUR][1000 genomes]
rs11171645	1.00[EUR][1000 genomes]
rs12299176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12301775	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12303548	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12305769	1.00[EUR][1000 genomes]
rs12306327	1.00[EUR][1000 genomes]
rs12307395	0.99[ASN][1000 genomes]
rs12308737	0.99[ASN][1000 genomes]
rs12310127	0.99[ASN][1000 genomes]
rs12310130	0.99[ASN][1000 genomes]
rs12313844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12313935	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12314499	0.99[ASN][1000 genomes]
rs12314803	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12315025	0.99[ASN][1000 genomes]
rs12578161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12580351	1.00[AMR][1000 genomes]
rs12580355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17117814	0.99[ASN][1000 genomes]
rs17120033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17120045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36194114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4268543	0.99[ASN][1000 genomes]
rs4545598	0.99[ASN][1000 genomes]
rs59430466	0.99[ASN][1000 genomes]
rs73329943	0.99[ASN][1000 genomes]
rs73329946	0.99[ASN][1000 genomes]
rs7973424	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56017000-56026000	Weak transcription	Right Atrium	heart
2	chr12:56018800-56022800	Weak transcription	GM12878-XiMat	blood
3	chr12:56018800-56025000	Weak transcription	Left Ventricle	heart
4	chr12:56019800-56022600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr12:56019800-56022800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr12:56020200-56023000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr12:56020600-56025200	Weak transcription	Right Ventricle	heart

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