Variant report

Variant	rs10877196
Chromosome Location	chr12:59362137-59362138
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10783929	0.89[EUR][1000 genomes]
rs10783930	0.88[EUR][1000 genomes]
rs10877190	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10877192	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10877193	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10877194	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10877195	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10877199	0.91[EUR][1000 genomes]
rs11172834	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11172841	0.86[EUR][1000 genomes]
rs11172842	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11172843	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11172850	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11172851	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11172863	0.92[EUR][1000 genomes]
rs11172865	0.84[EUR][1000 genomes]
rs11837281	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1436666	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17619704	0.84[EUR][1000 genomes]
rs4760147	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4760249	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4760252	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61919468	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61919473	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6581225	0.89[EUR][1000 genomes]
rs7133207	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs718135	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7300951	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7302452	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7306532	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7955741	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7961421	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7963114	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7979941	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9668096	0.91[EUR][1000 genomes]
rs9669562	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043385	chr12:59149582-59758952	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1067596	chr12:59167152-59764208	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv492251	chr12:59167152-59764208	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv559048	chr12:59336737-59440659	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv559049	chr12:59359937-59436179	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:59356000-59364000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:59361600-59362600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:59361800-59362800	Weak transcription	NHDF-Ad	bronchial

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