Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10506432	0.80[JPT][hapmap]
rs10506436	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10747951	0.81[JPT][hapmap]
rs10784279	0.95[JPT][hapmap]
rs10784280	0.95[JPT][hapmap]
rs10877784	0.95[JPT][hapmap]
rs10877785	0.82[CHD][hapmap];0.95[JPT][hapmap]
rs10877786	0.81[JPT][hapmap]
rs10877787	0.81[JPT][hapmap]
rs11174294	0.81[JPT][hapmap]
rs11174296	0.81[JPT][hapmap]
rs12229456	0.81[CHD][hapmap]
rs1373458	0.82[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap]
rs1373459	1.00[JPT][hapmap]
rs1373460	0.82[CHD][hapmap];0.95[JPT][hapmap]
rs3852566	0.84[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap]
rs9668144	0.83[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap]
rs9669425	0.83[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap]
rs9706516	0.81[JPT][hapmap]
rs9738190	0.81[JPT][hapmap]
rs9739464	0.95[ASN][1000 genomes]
rs9739867	0.83[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap]
rs9739956	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10877783	CCDC19	trans	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62420000-62420200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62420000-62420600	Active TSS	Ovary	ovary
3	chr12:62420000-62422600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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