Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10506432	0.85[JPT][hapmap]
rs10506436	0.95[JPT][hapmap]
rs10747951	0.85[JPT][hapmap]
rs10784279	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10784280	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10877783	0.82[CHD][hapmap];0.95[JPT][hapmap]
rs10877784	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10877785	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877786	0.85[JPT][hapmap]
rs10877787	0.85[JPT][hapmap]
rs11174294	0.85[JPT][hapmap]
rs11174296	0.85[JPT][hapmap]
rs1373458	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs1373459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36102522	0.98[ASN][1000 genomes]
rs3852565	0.97[ASN][1000 genomes]
rs3852566	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9668144	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs9669425	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs9706516	0.85[JPT][hapmap]
rs9738190	0.85[JPT][hapmap]
rs9739867	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs9739956	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv975607	chr12:62450308-62459569	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1373460	MIP	cis	parietal	SCAN
rs1373460	SDR9C7	cis	cerebellum	SCAN
rs1373460	LRIG3	cis	parietal	SCAN
rs1373460	GPR182	cis	cerebellum	SCAN
rs1373460	C12orf66	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62448000-62458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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