Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10879351	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs10879355	0.87[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap]
rs10879357	0.84[TSI][hapmap]
rs10879358	0.86[CEU][hapmap]
rs11179039	0.86[CHB][hapmap]
rs11179049	0.86[CEU][hapmap]
rs11179050	0.96[CEU][hapmap];0.87[GIH][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs11179052	0.87[CEU][hapmap];0.82[TSI][hapmap]
rs11179059	0.86[CEU][hapmap]
rs1352250	0.86[CHB][hapmap]
rs1386482	0.87[CEU][hapmap]
rs1386483	0.87[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap]
rs1386485	0.87[CEU][hapmap];0.86[GIH][hapmap];0.82[TSI][hapmap]
rs1386486	0.87[CEU][hapmap]
rs2200579	0.82[CEU][hapmap]
rs4290270	0.87[CEU][hapmap]
rs4430554	0.87[CEU][hapmap]
rs4469933	0.87[CEU][hapmap]
rs4474484	1.00[CEU][hapmap]
rs4488237	0.87[CEU][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518498	chr12:72307616-72508779	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1054578	chr12:72307616-72509341	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv899256	chr12:72409548-72499323	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:72406200-72410600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: