Variant report
Variant | rs1352250 |
---|---|
Chromosome Location | chr12:72397784-72397785 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10748190 | 0.88[CEU][hapmap];0.87[YRI][hapmap];0.86[EUR][1000 genomes] |
rs10879345 | 0.92[CEU][hapmap] |
rs10879346 | 0.85[CEU][hapmap];0.86[YRI][hapmap] |
rs10879350 | 0.82[JPT][hapmap] |
rs10879351 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10879352 | 0.88[CEU][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes] |
rs10879354 | 0.86[CHB][hapmap] |
rs11179023 | 0.82[JPT][hapmap] |
rs11179027 | 0.91[JPT][hapmap] |
rs11179033 | 0.82[JPT][hapmap] |
rs11179039 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11179046 | 0.85[EUR][1000 genomes] |
rs11179049 | 0.80[CHB][hapmap] |
rs11179050 | 0.83[CHB][hapmap] |
rs11834097 | 0.83[JPT][hapmap] |
rs11834114 | 0.82[JPT][hapmap] |
rs12229394 | 0.82[JPT][hapmap] |
rs12319219 | 0.91[JPT][hapmap] |
rs12322900 | 0.84[CEU][hapmap];0.86[YRI][hapmap] |
rs1352251 | 0.87[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1386498 | 1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1532008 | 0.84[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap] |
rs1843811 | 0.81[CEU][hapmap];0.87[JPT][hapmap] |
rs2171363 | 0.92[CEU][hapmap] |
rs2368049 | 0.83[CHB][hapmap];0.93[YRI][hapmap] |
rs3903502 | 0.88[CEU][hapmap];0.85[EUR][1000 genomes] |
rs4641528 | 0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes] |
rs4760750 | 0.85[JPT][hapmap] |
rs4760754 | 0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap] |
rs4760755 | 0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap] |
rs4760816 | 0.92[CEU][hapmap];0.86[JPT][hapmap] |
rs4760817 | 0.92[CEU][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap] |
rs6582073 | 0.92[CEU][hapmap];0.86[JPT][hapmap] |
rs6582077 | 0.92[CEU][hapmap];0.82[JPT][hapmap] |
rs7305115 | 0.92[CEU][hapmap];0.86[JPT][hapmap] |
rs7309686 | 0.84[CEU][hapmap];0.84[JPT][hapmap] |
rs7963720 | 0.92[CEU][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap] |
rs7967686 | 0.83[CEU][hapmap];0.80[CHB][hapmap];0.93[YRI][hapmap] |
rs7969114 | 0.83[CEU][hapmap];0.86[JPT][hapmap] |
rs7979770 | 0.84[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap] |
rs9325202 | 0.88[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1048478 | chr12:72145703-72401712 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
2 | nsv541530 | chr12:72145703-72401712 | Weak transcription ZNF genes & repeats Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
3 | nsv518498 | chr12:72307616-72508779 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1054578 | chr12:72307616-72509341 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
5 | esv3488908 | chr12:72397674-72398414 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
6 | esv3502573 | chr12:72397700-72398422 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
7 | esv3502577 | chr12:72397716-72398393 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
8 | esv3502576 | chr12:72397721-72398348 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
9 | esv3488886 | chr12:72397726-72398384 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
10 | esv3488864 | chr12:72397730-72398325 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
11 | esv3488897 | chr12:72397738-72398358 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
12 | esv3502575 | chr12:72397749-72398360 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
13 | esv3502572 | chr12:72397750-72398361 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
14 | esv3280 | chr12:72397767-72398375 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:72397400-72397800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |