Variant report

Variant	rs11179039
Chromosome Location	chr12:72402186-72402187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10748190	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs10879345	0.92[CEU][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap]
rs10879346	0.92[CEU][hapmap]
rs10879350	0.82[JPT][hapmap]
rs10879351	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10879352	0.89[ASW][hapmap];0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10879354	0.86[CHB][hapmap]
rs11179023	0.82[JPT][hapmap]
rs11179027	0.91[JPT][hapmap]
rs11179033	0.82[JPT][hapmap]
rs11179046	0.86[EUR][1000 genomes]
rs11179050	0.82[CHB][hapmap]
rs11834097	0.82[JPT][hapmap]
rs11834114	0.82[JPT][hapmap]
rs12229394	0.82[JPT][hapmap]
rs12319219	0.91[JPT][hapmap]
rs12322900	0.92[CEU][hapmap]
rs1352250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1352251	0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1386498	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs1532008	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs1843811	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs2171363	0.92[CEU][hapmap];0.81[GIH][hapmap]
rs2368049	0.81[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap]
rs3903502	0.89[ASW][hapmap];0.88[CEU][hapmap];0.81[LWK][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4641528	0.92[CEU][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap]
rs4760750	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs4760754	0.92[CEU][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap]
rs4760755	0.92[CEU][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap]
rs4760816	0.92[CEU][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap]
rs4760817	0.92[CEU][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap]
rs6582073	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs6582077	0.92[CEU][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap]
rs6582078	0.84[CEU][hapmap]
rs7305115	0.92[CEU][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap]
rs7309686	0.91[CEU][hapmap];0.84[JPT][hapmap]
rs7955501	0.84[CEU][hapmap]
rs7963720	0.92[CEU][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap]
rs7967686	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs7969114	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs7979770	0.92[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs9325202	0.94[ASW][hapmap];0.88[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518498	chr12:72307616-72508779	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1054578	chr12:72307616-72509341	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:72401600-72403400	Weak transcription	Fetal Heart	heart

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