Variant report

Variant	rs10880816
Chromosome Location	chr12:45940004-45940005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10785580	0.92[CEU][hapmap]
rs10880810	0.83[CEU][hapmap]
rs10880815	0.84[CEU][hapmap]
rs11183094	0.81[CEU][hapmap]
rs11183098	0.84[CEU][hapmap]
rs11183103	0.81[CEU][hapmap]
rs12579334	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17096082	0.92[ASN][1000 genomes]
rs1806689	0.92[CEU][hapmap]
rs2897908	0.81[CEU][hapmap]
rs3958762	0.81[CEU][hapmap]
rs4768636	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7132173	0.85[CEU][hapmap]
rs7303050	0.83[CEU][hapmap]
rs7960483	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1842210	chr12:45903118-45940761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45935200-45940400	Weak transcription	Thymus	Thymus
2	chr12:45938000-45940400	Weak transcription	Fetal Thymus	thymus
3	chr12:45938000-45943000	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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