Variant report

Variant	rs4768636
Chromosome Location	chr12:45940334-45940335
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:45939862..45941982-chr12:45942145..45944369,2	K562	blood:
2	chr12:45934191..45936111-chr12:45937786..45940550,2	MCF-7	breast:
3	chr12:45932018..45945296-chr12:46116937..46125620,30	MCF-7	breast:
4	chr12:45938673..45940532-chr12:45941016..45942628,2	MCF-7	breast:
5	chr12:45939592..45943310-chr12:46118770..46124565,10	MCF-7	breast:
6	chr12:45937645..45942060-chr12:45942145..45945791,6	K562	blood:

Variant related genes	Relation type
ENSG00000189079	Chromatin interaction
ENSG00000273015	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10785580	0.81[CEU][hapmap]
rs10880795	1.00[ASN][1000 genomes]
rs10880801	1.00[ASN][1000 genomes]
rs10880810	0.92[CEU][hapmap]
rs10880815	0.92[CEU][hapmap]
rs10880816	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11183055	1.00[ASN][1000 genomes]
rs11183063	1.00[ASN][1000 genomes]
rs11183073	1.00[ASN][1000 genomes]
rs11183074	1.00[ASN][1000 genomes]
rs11183094	0.92[CEU][hapmap]
rs11183098	0.92[CEU][hapmap]
rs11183103	0.92[CEU][hapmap]
rs11183105	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs11183112	1.00[CHB][hapmap]
rs12366559	1.00[ASN][1000 genomes]
rs12366804	0.81[AMR][1000 genomes]
rs12366900	1.00[ASN][1000 genomes]
rs12367751	1.00[ASN][1000 genomes]
rs12368524	0.81[AMR][1000 genomes]
rs1806689	0.81[CEU][hapmap]
rs2408252	1.00[ASN][1000 genomes]
rs2408267	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs2408268	0.86[MEX][hapmap]
rs2408269	0.81[AMR][1000 genomes]
rs2408270	0.81[AMR][1000 genomes]
rs2408273	1.00[ASN][1000 genomes]
rs2408319	1.00[ASN][1000 genomes]
rs2897908	0.92[CEU][hapmap]
rs3958762	0.92[CEU][hapmap]
rs4408369	1.00[ASN][1000 genomes]
rs4438105	1.00[CHB][hapmap]
rs4444141	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4550277	0.81[AMR][1000 genomes]
rs4768639	0.80[AMR][1000 genomes]
rs4768640	0.82[AMR][1000 genomes]
rs6582555	1.00[ASN][1000 genomes]
rs7132173	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7299839	1.00[ASN][1000 genomes]
rs7303050	0.92[CEU][hapmap]
rs7312557	1.00[ASN][1000 genomes]
rs7315711	1.00[ASN][1000 genomes]
rs7955214	1.00[ASN][1000 genomes]
rs7960483	0.92[CEU][hapmap]
rs7964616	1.00[ASN][1000 genomes]
rs7973880	1.00[ASN][1000 genomes]
rs7979215	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1842210	chr12:45903118-45940761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45935200-45940400	Weak transcription	Thymus	Thymus
2	chr12:45938000-45940400	Weak transcription	Fetal Thymus	thymus
3	chr12:45938000-45943000	Weak transcription	Dnd41	blood

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