Variant report

Variant	rs2408273
Chromosome Location	chr12:45897099-45897100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45891586..45893830-chr12:45896863..45899327,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10748424	0.89[CEU][hapmap]
rs10880795	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880801	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183055	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183063	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183073	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183074	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183105	1.00[CHB][hapmap]
rs11183112	1.00[CHB][hapmap]
rs12366559	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366900	1.00[ASN][1000 genomes]
rs12367751	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408252	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408267	1.00[CHB][hapmap]
rs2408318	0.82[CEU][hapmap]
rs2408319	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408369	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438105	1.00[CHB][hapmap]
rs4444141	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576884	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4603367	0.83[EUR][1000 genomes]
rs4768636	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6582555	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132173	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7298387	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7299839	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312557	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7315711	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7486952	0.83[CEU][hapmap]
rs7955214	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964616	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7968560	0.81[CEU][hapmap]
rs7973880	1.00[ASN][1000 genomes]
rs7979215	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508672	chr12:45884730-45931091	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1812235	chr12:45892993-45909531	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1791767	chr12:45892993-45912862	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45892200-45901600	Weak transcription	Pancreas	Pancrea
2	chr12:45896800-45901600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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