Variant report
| Variant | rs11183112 |
|---|---|
| Chromosome Location | chr12:45952097-45952098 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| RNU6-671P | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10161233 | 0.85[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs10748428 | 0.93[EUR][1000 genomes] |
| rs10785582 | 0.81[EUR][1000 genomes] |
| rs11183104 | 0.85[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11183105 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12366804 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12368524 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2408262 | 0.85[CEU][hapmap] |
| rs2408267 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2408268 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs2408269 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2408270 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4438105 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4444141 | 1.00[CHB][hapmap] |
| rs4550277 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4592483 | 0.83[ASN][1000 genomes] |
| rs4768636 | 1.00[CHB][hapmap] |
| rs4768639 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4768640 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7132173 | 1.00[CHB][hapmap] |
| rs7957597 | 0.83[EUR][1000 genomes] |
| rs7976247 | 0.83[ASN][1000 genomes] |
| rs7979337 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832395 | chr12:45841765-46039297 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
