Variant report

Variant	rs11183105
Chromosome Location	chr12:45942027-45942028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:45941297..45944696-chr12:46119825..46122754,3	K562	blood:
2	chr12:45932018..45945296-chr12:46116937..46125620,30	MCF-7	breast:
3	chr12:45939592..45943310-chr12:46118770..46124565,10	MCF-7	breast:
4	chr12:45938673..45940532-chr12:45941016..45942628,2	MCF-7	breast:
5	chr12:45937645..45942060-chr12:45942145..45945791,6	K562	blood:
6	chr12:45940816..45942865-chr12:45947485..45949791,2	MCF-7	breast:
7	chr12:45941376..45942308-chr12:46118994..46119772,3	MCF-7	breast:
8	chr12:45940844..45942797-chr12:46119656..46122517,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000239178	Chromatin interaction
ENSG00000273015	Chromatin interaction
ENSG00000189079	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10161233	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10748428	0.87[EUR][1000 genomes]
rs11183104	0.89[CEU][hapmap];0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11183112	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366804	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12368524	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408262	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs2408267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408268	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2408269	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408270	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438105	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444141	1.00[CHB][hapmap]
rs4550277	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4592483	0.83[ASN][1000 genomes]
rs4768636	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs4768639	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768640	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132173	1.00[CHB][hapmap]
rs7957597	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7976247	0.83[ASN][1000 genomes]
rs7979337	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45938000-45943000	Weak transcription	Dnd41	blood
2	chr12:45940400-45943600	Enhancers	Fetal Thymus	thymus
3	chr12:45941600-45943200	Weak transcription	Thymus	Thymus

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