Variant report
| Variant | rs7979337 |
|---|---|
| Chromosome Location | chr12:45956220-45956221 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000189079 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10748428 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11183105 | 0.83[EUR][1000 genomes] |
| rs11183112 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11183114 | 0.86[EUR][1000 genomes] |
| rs12366804 | 0.87[EUR][1000 genomes] |
| rs12368524 | 0.87[EUR][1000 genomes] |
| rs2408267 | 0.86[EUR][1000 genomes] |
| rs2408269 | 0.87[EUR][1000 genomes] |
| rs2408270 | 0.87[EUR][1000 genomes] |
| rs4438105 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4550277 | 0.87[EUR][1000 genomes] |
| rs4768639 | 0.86[EUR][1000 genomes] |
| rs4768640 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832395 | chr12:45841765-46039297 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
