Variant report

Variant	rs11183114
Chromosome Location	chr12:45959370-45959371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10161233	0.89[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs10506263	0.91[ASN][1000 genomes]
rs10748428	0.82[EUR][1000 genomes]
rs10785582	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11183104	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs11183112	0.82[CEU][hapmap]
rs2408262	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2408268	0.89[CEU][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs4438105	0.80[EUR][1000 genomes]
rs7957597	0.84[EUR][1000 genomes]
rs7979337	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45959200-45960800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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