Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:45942458..45944629-chr12:45945848..45948154,2	K562	blood:
2	chr12:45939862..45941982-chr12:45942145..45944369,2	K562	blood:
3	chr12:45941297..45944696-chr12:46119825..46122754,3	K562	blood:
4	chr12:45932018..45945296-chr12:46116937..46125620,30	MCF-7	breast:
5	chr12:45939592..45943310-chr12:46118770..46124565,10	MCF-7	breast:
6	chr12:45938673..45940532-chr12:45941016..45942628,2	MCF-7	breast:
7	chr12:45940816..45942865-chr12:45947485..45949791,2	MCF-7	breast:
8	chr12:45940844..45942797-chr12:46119656..46122517,2	K562	blood:
9	chr12:45937645..45942060-chr12:45942145..45945791,6	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10785582	0.85[EUR][1000 genomes]
rs11183104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183105	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11183106	0.89[CEU][hapmap];0.80[MEX][hapmap]
rs11183112	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs11183114	0.81[EUR][1000 genomes]
rs12366804	0.85[EUR][1000 genomes]
rs12368524	0.85[EUR][1000 genomes]
rs2408262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408267	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs2408268	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2408269	0.85[EUR][1000 genomes]
rs2408270	0.85[EUR][1000 genomes]
rs4277176	0.84[CEU][hapmap]
rs4277177	0.89[CEU][hapmap];0.80[MEX][hapmap]
rs4438105	0.80[CEU][hapmap]
rs4550277	0.85[EUR][1000 genomes]
rs4768639	0.85[EUR][1000 genomes]
rs4768640	0.85[EUR][1000 genomes]
rs7957597	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45938000-45943000	Weak transcription	Dnd41	blood
2	chr12:45940400-45943600	Enhancers	Fetal Thymus	thymus
3	chr12:45941600-45943200	Weak transcription	Thymus	Thymus
4	chr12:45942400-45942600	Enhancers	Esophagus	oesophagus

Quick Search: