Variant report

Variant	rs4444141
Chromosome Location	chr12:45869498-45869499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45867797..45870774-chr12:46120791..46124343,3	MCF-7	breast:
2	chr12:45867911..45870398-chr12:45938179..45940092,2	K562	blood:

Variant related genes	Relation type
ENSG00000273015	Chromatin interaction
ENSG00000189079	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10748424	0.82[CEU][hapmap]
rs10880795	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880801	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183055	1.00[ASN][1000 genomes]
rs11183063	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183073	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183074	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183105	1.00[CHB][hapmap]
rs11183112	1.00[CHB][hapmap]
rs12366559	1.00[ASN][1000 genomes]
rs12366900	1.00[ASN][1000 genomes]
rs12367751	1.00[ASN][1000 genomes]
rs2408252	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408267	1.00[CHB][hapmap]
rs2408273	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408319	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408369	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438105	1.00[CHB][hapmap]
rs4576884	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4603367	0.80[EUR][1000 genomes]
rs4768636	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6582555	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132173	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7298387	0.85[EUR][1000 genomes]
rs7299839	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312557	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7315711	1.00[ASN][1000 genomes]
rs7955214	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964616	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973880	1.00[ASN][1000 genomes]
rs7979215	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45865200-45870600	Weak transcription	Adipose Nuclei	Adipose
2	chr12:45866600-45870800	Enhancers	Fetal Thymus	thymus
3	chr12:45868000-45870400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:45868600-45870600	Enhancers	Thymus	Thymus
5	chr12:45869000-45869600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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