Variant report

Variant	rs10880795
Chromosome Location	chr12:45881423-45881424
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10748424	0.85[CEU][hapmap]
rs10880801	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183055	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183063	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183073	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183074	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183105	1.00[CHB][hapmap]
rs11183112	1.00[CHB][hapmap]
rs12366559	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366900	1.00[ASN][1000 genomes]
rs12367751	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408252	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408267	1.00[CHB][hapmap]
rs2408273	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408319	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408369	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438105	1.00[CHB][hapmap]
rs4444141	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576884	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4603367	0.83[EUR][1000 genomes]
rs4768636	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6582555	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132173	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7298387	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7299839	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312557	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7315711	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955214	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964616	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973880	1.00[ASN][1000 genomes]
rs7979215	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45880000-45882200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:45881200-45881600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr12:45881200-45881600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:45881400-45881800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:45881400-45881800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr12:45881400-45882000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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