Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10880795	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880801	1.00[ASN][1000 genomes]
rs11183055	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183063	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183073	1.00[ASN][1000 genomes]
rs11183074	1.00[ASN][1000 genomes]
rs11183105	1.00[CHB][hapmap]
rs11183112	1.00[CHB][hapmap]
rs12366559	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366900	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408252	1.00[ASN][1000 genomes]
rs2408267	1.00[CHB][hapmap]
rs2408273	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408319	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408369	1.00[ASN][1000 genomes]
rs4438105	1.00[CHB][hapmap]
rs4444141	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4576884	0.81[EUR][1000 genomes]
rs4603367	0.92[EUR][1000 genomes]
rs4768636	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6582555	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132173	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7299839	1.00[ASN][1000 genomes]
rs7312557	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7315711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955214	1.00[ASN][1000 genomes]
rs7964616	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7973880	1.00[ASN][1000 genomes]
rs7979215	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45850800-45854200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:45851200-45853200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:45851400-45854000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:45851800-45852600	Enhancers	Fetal Heart	heart
5	chr12:45852000-45854200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:45852400-45852800	Enhancers	NHDF-Ad	bronchial

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