Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45923564..45926208-chr12:46122696..46124400,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189079	Chromatin interaction

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10880795	1.00[ASN][1000 genomes]
rs10880801	1.00[ASN][1000 genomes]
rs10880810	0.88[CEU][hapmap]
rs10880815	0.88[CEU][hapmap]
rs10880816	0.85[CEU][hapmap]
rs11183055	1.00[ASN][1000 genomes]
rs11183063	1.00[ASN][1000 genomes]
rs11183073	1.00[ASN][1000 genomes]
rs11183074	1.00[ASN][1000 genomes]
rs11183094	0.89[CEU][hapmap]
rs11183098	0.88[CEU][hapmap]
rs11183103	0.89[CEU][hapmap]
rs11183105	1.00[CHB][hapmap]
rs11183112	1.00[CHB][hapmap]
rs12366559	1.00[ASN][1000 genomes]
rs12366900	1.00[ASN][1000 genomes]
rs12367751	1.00[ASN][1000 genomes]
rs2408252	1.00[ASN][1000 genomes]
rs2408267	1.00[CHB][hapmap]
rs2408273	1.00[ASN][1000 genomes]
rs2408319	1.00[ASN][1000 genomes]
rs2897908	0.89[CEU][hapmap]
rs3958762	0.89[CEU][hapmap]
rs4408369	1.00[ASN][1000 genomes]
rs4438105	1.00[CHB][hapmap]
rs4444141	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4768636	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6582555	1.00[ASN][1000 genomes]
rs7299839	1.00[ASN][1000 genomes]
rs7303050	0.88[CEU][hapmap]
rs7312557	1.00[ASN][1000 genomes]
rs7315711	1.00[ASN][1000 genomes]
rs7955214	1.00[ASN][1000 genomes]
rs7960483	0.88[CEU][hapmap]
rs7964616	1.00[ASN][1000 genomes]
rs7973880	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979215	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508672	chr12:45884730-45931091	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv558761	chr12:45901586-45924964	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1842210	chr12:45903118-45940761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3443760	chr12:45913734-45935783	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45913200-45927000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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