Variant report

Variant	rs6582555
Chromosome Location	chr12:45889818-45889819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:145457208..145457776-chr12:45889810..45890653,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SCAF11-7	chr12:45888470-45890811	refGeneNc_2367_NR_026544

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10748424	0.89[CEU][hapmap]
rs10880795	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880801	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183055	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183063	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183073	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183074	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183105	1.00[CHB][hapmap]
rs11183112	1.00[CHB][hapmap]
rs12366559	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366900	1.00[ASN][1000 genomes]
rs12367751	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408252	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408267	1.00[CHB][hapmap]
rs2408273	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408318	0.82[CEU][hapmap]
rs2408319	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408369	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438105	1.00[CHB][hapmap]
rs4444141	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576884	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4603367	0.83[EUR][1000 genomes]
rs4768636	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7132173	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7298387	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7299839	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312557	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7315711	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7486952	0.83[CEU][hapmap]
rs7955214	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7968560	0.81[CEU][hapmap]
rs7973880	1.00[ASN][1000 genomes]
rs7979215	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508672	chr12:45884730-45931091	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links