Variant report

Variant	rs10880825
Chromosome Location	chr12:45991896-45991897
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11183125	1.00[ASN][1000 genomes]
rs11183128	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11183132	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183133	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12822464	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1862019	1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4592483	0.83[ASN][1000 genomes]
rs4768092	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6582563	0.85[EUR][1000 genomes]
rs7135541	1.00[ASN][1000 genomes]
rs7138747	1.00[ASN][1000 genomes]
rs7958336	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7976247	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2751099	chr12:45960118-46043633	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45986000-45992600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:45988400-45992600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:45990800-45992400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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