Variant report

Variant	rs4768092
Chromosome Location	chr12:45981114-45981115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10880822	0.93[EUR][1000 genomes]
rs10880824	0.81[CEU][hapmap]
rs10880825	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11183116	0.81[EUR][1000 genomes]
rs11183125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183128	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12822464	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1862019	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544099	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs2712579	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs4592483	0.83[ASN][1000 genomes]
rs7135541	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7138747	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7139131	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7976247	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2751099	chr12:45960118-46043633	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv973061	chr12:45977176-45984724	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45976400-45987000	Weak transcription	Esophagus	oesophagus
2	chr12:45980000-45981400	Enhancers	Colonic Mucosa	Colon
3	chr12:45980200-45981600	Enhancers	Duodenum Mucosa	Duodenum
4	chr12:45980400-45982400	Enhancers	Fetal Intestine Small	intestine
5	chr12:45980400-45982800	Enhancers	Stomach Mucosa	stomach
6	chr12:45980400-45983000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr12:45980600-45981200	Enhancers	Liver	Liver
8	chr12:45980600-45985400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr12:45980800-45981400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
10	chr12:45980800-45982000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:45981000-45982800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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