Variant report

Variant	rs10880822
Chromosome Location	chr12:45968198-45968199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10736028	0.88[ASN][1000 genomes]
rs11183116	0.85[EUR][1000 genomes]
rs11183118	0.83[ASN][1000 genomes]
rs11183125	0.91[EUR][1000 genomes]
rs11183128	0.86[EUR][1000 genomes]
rs12822464	0.86[EUR][1000 genomes]
rs2544099	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2712579	0.83[EUR][1000 genomes]
rs4768092	0.93[EUR][1000 genomes]
rs7135541	0.88[EUR][1000 genomes]
rs7138747	0.88[EUR][1000 genomes]
rs7139131	0.88[EUR][1000 genomes]
rs7312766	0.83[ASN][1000 genomes]
rs73289052	0.88[ASN][1000 genomes]
rs73289060	0.88[ASN][1000 genomes]
rs73289064	0.88[ASN][1000 genomes]
rs7980451	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2751099	chr12:45960118-46043633	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45963600-45969200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:45963600-45969400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:45966800-45975400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:45967000-45976400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:45967400-45968400	Weak transcription	Stomach Mucosa	stomach
6	chr12:45967800-45969800	Enhancers	Duodenum Mucosa	Duodenum
7	chr12:45967800-45971600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:45968000-45969600	Enhancers	Primary B cells from cord blood	blood
9	chr12:45968000-45971000	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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