Variant report

Variant	rs73289052
Chromosome Location	chr12:45964563-45964564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10736028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880822	0.88[ASN][1000 genomes]
rs11183118	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17096106	1.00[EUR][1000 genomes]
rs17121378	1.00[EUR][1000 genomes]
rs2408261	1.00[EUR][1000 genomes]
rs60290398	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61654777	1.00[EUR][1000 genomes]
rs7312766	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73289029	1.00[EUR][1000 genomes]
rs73289049	1.00[EUR][1000 genomes]
rs73289060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73289064	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7980451	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2751099	chr12:45960118-46043633	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45959600-45966400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr12:45960800-45965200	Weak transcription	Stomach Mucosa	stomach
3	chr12:45962600-45968000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr12:45963600-45969200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:45963600-45969400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:45963800-45967800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr12:45964200-45964600	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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