Variant report

Variant	rs17096106
Chromosome Location	chr12:45940096-45940097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10736028	1.00[EUR][1000 genomes]
rs11183118	1.00[EUR][1000 genomes]
rs17096071	0.83[AMR][1000 genomes]
rs17121378	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2408261	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4269980	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs60290398	1.00[EUR][1000 genomes]
rs61275883	0.83[AMR][1000 genomes]
rs61654777	1.00[EUR][1000 genomes]
rs7312766	1.00[EUR][1000 genomes]
rs73286980	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73289029	1.00[EUR][1000 genomes]
rs73289049	1.00[EUR][1000 genomes]
rs73289052	1.00[EUR][1000 genomes]
rs73289060	1.00[EUR][1000 genomes]
rs73289064	1.00[EUR][1000 genomes]
rs7980451	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1842210	chr12:45903118-45940761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45935200-45940400	Weak transcription	Thymus	Thymus
2	chr12:45938000-45940400	Weak transcription	Fetal Thymus	thymus
3	chr12:45938000-45943000	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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